GA4GH Schemas
stable
  • Introduction
  • API Overview
  • Installing the GA4GH Schemas
  • Schemas
  • Development
  • Changelog
  • Appendix
GA4GH Schemas
  • Docs »
  • GA4GH Genomics API
  • Edit on GitHub

_images/logo_ga.png

GA4GH Genomics API¶

The GA4GH API attempts to gather together protocols and data models useful for genomics data interchange. It offers protocols that can be implemented over existing Genomics data stores to make these results more easily discovered, shared, and replicated.

Contents¶

  • Introduction
    • Why use this web API?
    • If you need background
    • The GA4GH web API
    • Schemas and formats
  • API Overview
    • API Design
    • API Goals
    • Reads
    • Variants
    • References
    • Sequence Annotations
    • Metadata
    • Allele Annotations
    • RNA Quantification
    • Genotype to Phenotype
    • Network
  • Installing the GA4GH Schemas
    • Generating Source Code
    • Installing the Documentation Tools and Generating Documentation
    • Generate the documentation
  • Schemas
    • common
    • bio_metadata
    • bio_metadata_service
    • metadata
    • metadata_service
    • reads
    • read_service
    • references
    • reference_service
    • variants
    • variant_service
    • rna_quantification
    • rna_quantification_service
    • allele_annotations
    • allele_annotation_service
    • sequence_annotations
    • sequence_annotation_service
    • struct
    • genotype_phenotype
    • genotype_phenotype_service
    • peer_service
  • Development
    • Release process
  • Changelog
    • Schema Release v0.6.0a10
    • Schema Release v0.6.0a9
    • Schema Release v0.6.0a8
    • Schema Release v0.6.0a7
    • Schema Release v0.6.0a6
    • Schema Release v0.6.0a5
    • Schema Release v0.6.0a4
    • Schema Release v0.6.0a3
    • Schema Release v0.6.0a2
    • Schema Release v0.6.0a1
  • Appendix
    • Glossary
    • Use of Ontologies in GA4GH API
    • The JSON Format
    • Google Protocol Buffers
    • Code samples (stub)
    • Generating API Definitions
Next

© Copyright 2015, Global Alliance for Genomics and Health. Revision 0328d20d.

Read the Docs v: stable
Versions
latest
stable
documentation
Downloads
pdf
htmlzip
epub
On Read the Docs
Project Home
Builds

Free document hosting provided by Read the Docs.