GA4GH Schemas
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Introduction
API Overview
Installing the GA4GH Schemas
Schemas
Development
Changelog
Appendix
Glossary
Use of Ontologies in GA4GH API
The JSON Format
Google Protocol Buffers
Code samples (stub)
Generating API Definitions
GA4GH Schemas
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Appendix
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Appendix
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Glossary
Short Reads and BAM
Genetic variants and VCF
Use of Ontologies in GA4GH API
Examples for OntologyTerm use
Why should we use an ontology term?
Ontology Lookup Service
What is the minimum attribute requirement for OntologyTerm in GA4GH?
Ontology Selection and Overlap
Examples
Genotypic sex
Sequence Ontology
Human Phenotype ontology
Body part (Uberon)
Human disease ontology
Experimental factor ontology
Unit Ontology
The JSON Format
GA4GH JSON Serialization
Serialization example
Google Protocol Buffers
What does the GA4GH web API take from Protocol Buffers?
How does the GA4GH web API use Protocol Buffer schemas?
How does the GA4GH Web API use Protocol Buffers?
Code samples (stub)
Generating API Definitions
Installing Prerequisites
Compiling Swagger Documentation
Using Generated Definitions
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